PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0755s0140.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 217aa    MW: 24444.5 Da    PI: 4.1661
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0755s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM851.4e-26131361128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWka 85 
                             l pG+rF Pt++el+v+yLk+k+ g++l++ +vi+++d+y ++P +Lp   +k+ e +ew+fFs+r+k          + + gy   
  SapurV1A.0755s0140.1.p  13 LVPGYRFIPTNDELIVYYLKRKIMGQQLPC-DVIPTIDVYASNPDKLPlDDLKGgEANEWFFFSTRSKDD-----DVIVLDGGYYAI 93 
                             579***************************.99***************6566662556*******98864.....456788999985 PP

                     NAM  86 tgk.dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               +   +++  +g++vg  ktL fykg++p+g++t+W+++e r+
  SapurV1A.0755s0140.1.p  94 DPEgAGPITW-EGKTVGYVKTLNFYKGSSPDGKETEWMVEELRV 136
                             4442688888.999**************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-307139IPR003441NAC domain
PROSITE profilePS5100529.57113184IPR003441NAC domain
PfamPF023652.2E-1515135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MASGGQALNV PFLVPGYRFI PTNDELIVYY LKRKIMGQQL PCDVIPTIDV YASNPDKLPL  60
DDLKGGEANE WFFFSTRSKD DDVIVLDGGY YAIDPEGAGP ITWEGKTVGY VKTLNFYKGS  120
SPDGKETEWM VEELRVNLEF VPVDNDDRST QEKASVSGST SRLTMLYVVN VQIENLVACR  180
VSRVQPETEW YEYFDEEIEK EAKRGKFEIP ASLLEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-21813613140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091849e-95AC209184.1 Populus trichocarpa clone POP031-J16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318467.13e-98hypothetical protein POPTR_0012s03100g
TrEMBLB9I2374e-98B9I237_POPTR; Uncharacterized protein
STRINGPOPTR_0012s03100.11e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14452718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.12e-25NAC domain containing protein 86